Hi Bioconductor Community,
We would like to update the EBSeq package, which was initially introduced on Bioconductor almost 10 years ago. It is slow when handling datasets containing a big number of groups. To address this issue, we have optimized the codes and algorithm and achieved remarkable speed improvement. The newly optimized package can be found at https://github.com/wiscstatman/EBSeq.
The original maintainer of the EBSeq, Ning has left the lab, so we are not sure of how to proceed and appreciate your advice regarding the package update.