DiffBind PE data
Last seen 2.9 years ago
In the current version of DiffBind what are the steps for indicating that PE data is being used? Thank you.
Last seen 20 months ago
DiffBind doesn't account for PE data. (Yes, it should, but it doesn't.) Either just use forward-strand reads, or make sure that all your data are PE, then it'll just count each end independently.
Last seen 20 hours ago
CRUK, Cambridge, UK
Updating this to reflect that
DiffBind has supported PE data for a couple of years now.
The most recent version will automatically detect SE or PE from the bams and perform the counting appropriately.
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