ligand-receptor-interactions for bulk RNAseq in R
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@22d77658
Last seen 26 days ago
United States

Hi, Is there an R implementation for the Enrichment of ligand-receptor interactions for Bulk RNAseq? There is a very good Python walkthrough here [https://decoupler-py.readthedocs.io/en/latest/notebooks/bulk.html#Enrichment-of-ligand-receptor-interactions] but I can't find anything for R.

More specifically, I am having a hard time formatting the ligand-receptor interactions to the decoupleR appropriate format

Code should be placed in three backticks as shown below

liana_lr <- liana::select_resource(resource = "CellPhoneDB")

Thanks!

decoupleR • 140 views
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