How to get the DMR?
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Alex • 0
@33657992
Last seen 1 day ago
France

Hello, I'm using ENmix to achieve my methylome analysis but I cannot calculate the DMR.
Regarding the DMR, the manuals specify:

The input should be a data frame with column names "chr","start", "end","p", and "probe"

When, during the pipeline, such a format file is created?

Thank you for your help.

Alex

ENmix • 163 views
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These are from downstream association analysis result; The pipeline is only for data preprocessing and quality control. P values are association P values; chr and start are the CpG chromosome and chromosome position, which can be extracted using command getCGinfo, like cginfo=getCGinfo(rgSet); end is chromosome position +1.

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Thank you very much for these informations.

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