Error in bam loading in getUniqueCleavageEvents() in GUIDEseq package
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StayM • 0
@8a8f5cdf
Last seen 8 hours ago
France

Hi all bioconductor user's,

I try to use GUIDEseq bioconductor package with my data. I first make my bam, bed and umi files before to use the package. Then when I try to load my bam file in R I have this error :

Erreur dans data.frame(..., check.names = FALSE) :
les arguments impliquent des nombres de lignes différents : 0, 1

I saw previous post on this function (getUniqueCleavageEvents() not working in GUIDEseq package) and i try to test with this function :

GUIDEseq:::importBAMAlignments(file = "yourBAMfile")

I have the same error.

I previously try this package with test data and I don't have this error.

I don't see any specific problem with my bam file except that the test bam version is 1.0 and my bam is 1.5. (picard CompareSAMs fucntion)

Please can you help me on this suject,

Thanks!

Best,

GUIDEseq • 80 views
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