Fail to install hgu133plus2.db
1
0
Entering edit mode
yu • 0
@acd73e39
Last seen 12 days ago
Hong Kong

When I try to install hgu133plus2.db in R studio, it automatically starts to install org.Hs.eg.db.

And then it tells me the error: dependency 'org.Hs.eg.db' is not available for package 'hgu133plus2.db'

I have no idea what to do... Thank you so much for helping me!


if(!requireNamespace("hgu133plus2.db",quietly = T))
  BiocManager::install("hgu133plus2.db")
org.Hs.eg.db hgu133plus2 • 193 views
ADD COMMENT
0
Entering edit mode

Problem solved!

I downloaded the org.Hs.eg.db package from the website, and installed with the following code, then everything worked perfectly.

install.packages(".../Downloads/org.Hs.eg.db_3.19.1.tar.gz", repos = NULL, type = "source")
ADD REPLY
0
Entering edit mode
@james-w-macdonald-5106
Last seen 1 hour ago
United States

FYI, you can just do

BiocManager::install("org.Hs.eg.db")

And you will for sure get the correct version, whereas downloading directly provides no guarantee of that.

Login before adding your answer.

Traffic: 1133 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6