Annotating DMRs
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@ramirobarrantes-7796
Last seen 16 days ago
United States

I am using the sesame package to obtain differentially methylated regions (DMRs)

dmContrasts(smry)                       
merged = DMR(se, smry, "sexMale")

How can I annotate these regions with gene information or do an enrichment analysis?

If it were just probes I can use the command sesameData_annoProbes, but how do I annotate groups of probes such as DMRs with enrichment information?

MethylationArray MethylationArrayData methylationArrayAnalysis • 208 views
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@james-w-macdonald-5106
Last seen 21 hours ago
United States

You could use ChIPpeakAnno, or missMethyl

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