UniProt.ws query loading indefinitely
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Patrick • 0
@091a8921
Last seen 11 days ago
United States

I just want to load come basic UniProt data into R Studio, but it just loads forever. I ran the same command with associated packages on Google Colab and it loaded in less than a second! However, I'd like to have it work on my local hardware. Any input is greatly appreciated.

I updated R to 4.4.2 BiocManager version 3.20 UniProt version 2.46.1

library(BiocManager)
library(UniProt.ws)

up <- UniProt.ws(taxId = 9606)
UniProt.ws • 123 views
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@james-w-macdonald-5106
Last seen 4 days ago
United States

It should be almost instantaneous. Do you have internet access on the local computer?

> system.time(up <- UniProt.ws())
   user  system elapsed 
   0.03    0.04    0.81 
> sessionInfo()
R version 4.4.1 (2024-06-14 ucrt)
Platform: x86_64-w64-mingw32/x64
Running under: Windows 11 x64 (build 22631)

Matrix products: default


locale:
[1] LC_COLLATE=English_United States.utf8 
[2] LC_CTYPE=English_United States.utf8   
[3] LC_MONETARY=English_United States.utf8
[4] LC_NUMERIC=C                          
[5] LC_TIME=English_United States.utf8    

time zone: America/New_York
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices
[4] utils     datasets  methods  
[7] base     

other attached packages:
[1] UniProt.ws_2.46.1  
[2] RSQLite_2.3.7      
[3] BiocGenerics_0.52.0

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