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Hi,
I have 8 samples with gene expression data, coming from 4 subjects, before and after treatment. I would like to get the overall differential expression before and after treatment, and also the differential expression per subject. I understand that I cannot do statistics "per subject". Is there any way to display the contribution per subject to the overall differential expression?
many thanks, Martijn Huynen
thanks James, but if I do pairwise analyses per subject, I get the impression that I only get the intercepts per gene. Do you mean regarding the subjects as repeats of the same experiment?