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Question: Epigenetic clock (Horvath): package?
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gravatar for Brian Smith
9 months ago by
Brian Smith90
United States
Brian Smith90 wrote:

Hi,

I was working with some illumina EPIC data and trying to determine the epigenetic age of samples for whole blood. I know that on Horvath's website there is an online calculator for whole blood, but the code doesn't seem to be provided. Also, in the vignette for minfi, in section "Other stuff" there is a sub-heading 'Horvath Age Estimation'. Has this been implemented in minfi? Or is there any other package that implements the epigenetic clock algorithm?

 

thanks!

ADD COMMENTlink modified 8 months ago by Wade Davis0 • written 9 months ago by Brian Smith90
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gravatar for Wade Davis
8 months ago by
Wade Davis0
USA
Wade Davis0 wrote:

I would willing to put effort into this (along with others in my group) if we can get some of the underlying code, particularly the "advanced method" which is only available in the online calculator.

 

Wade

ADD COMMENTlink written 8 months ago by Wade Davis0
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