I have RNASeq data for which I performed differential expression analysis (using the R package edgeR) and gene coexpression analysis using the R package WGCNA in order to separate my genes into gene modules.
I see that wgcna has functions to export its data to cytoscape and visant for network visualization.
My question is:
- Is IPA suitable for network visualization like cytoscape does?
- If yes, how can I export wgcna data in the right format for IPA? Is there some function in WGCNA for exporting data for IPA as well as it does for cytoscape?