Hi I was trying to perform a metagene analysis.
I think I have gotten the files ready : a bed files + n bam files (sorted)
my questions are somewhat naive:
1. how to import these file in order to perform analysis?
in the vignette :
bam_files <- get_demo_bam_files() regions <- get_demo_regions()
then, how about "my_own.bed" (~/current directory/my_own.bed), "my_own.bam" (~/current directory/my_own.bam)?
2. is there any way to customize the plot?
p <- plot_metagene(df) p + ggplot2::ggtitle("Managing large datasets")
looking at this example I tried:
p <- mg$plot(title = "Demo metagene plot") p + ggplot2::ggtitle("Managing large datasets")
it did not work out(error: non-numeric argument to binary operator)
p + ggplot2::ggtitle("Managing large datasets")
somehow suggest that ggplot2 maybe use to customize the plot...