Setting relevel with the JunctionSeq package
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Assa Yeroslaviz ★ 1.5k
@assa-yeroslaviz-1597
Last seen 4 months ago
Munich, Germany

Hi,

I was wondering if there is a way to set a reference in the function runJunctionSeqAnalysis, like it can be done in DESeq. in the manual it says it will always regards the first factor as  the reference.

But what if I want to have the second factor as a reference. Is there  a way to set this in the command (or before)

thanks

Assa

junctionseq relevel reference • 478 views
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