I have a list of several base pair locations (each have a start and end base pair). Eg:
Chr:17, BasePair1: 26804211 , BasePair2: 26818676
And I am looking to find all possible annotations including gene name, known SNPs , microRNA etc between these two base pair locations (the region need not be in the exonic region, it can be any region in the genome)
I'm trying to sort of get a comprehensive understanding of the region from the annotation.
I can create a
GRanges object with my input, and can start with the "
TxDb.Hsapiens.UCSC.hg19.knownGene" to get gene names.
Can anyone suggest similar packages for me to get any other annotation information ?