GENESIS examples dataset not found?
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tjzhou • 0
@tjzhou-12433
Last seen 7.2 years ago

Hi all,

I am trying to learn how to use the GENESIS package for one my projects. I've successfully installed the package using:

## source("https://bioconductor.org/biocLite.R")
## biocLite("GENESIS")

And in the GENESIS documentation they have an example that I wanted to try out:

library(GWASTools)
# file path to GDS file
gdsfile <- system.file("extdata", "HapMap_ASW_MXL_geno.gds", package="GENESIS")
# read in GDS data
HapMap_geno <- GdsGenotypeReader(filename = gdsfile)
# create a GenotypeData class object
HapMap_genoData <- GenotypeData(HapMap_geno)
# load saved matrix of KING-robust estimates
data("HapMap_ASW_MXL_KINGmat")

But I couldn't load the data, and got an error message:

Warning message:
In data(HapMap_ASW_MXL_KINGmat) :
  data set ‘HapMap_ASW_MXL_KINGmat’ not found

Has anyone else had this problem? Does anyone know how to fix it?

Thanks,

T

bioconductor R • 606 views
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