Any tool to calculate Fst on haploid data?
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rkdonthu ▴ 10
@rkdonthu-12441
Last seen 4.6 years ago

Hello,

I could not find any tool/script that calculates FST on haploid data. All the tools that I know of calculate FST on diploid data only. I really appreciate anyone's help in finding a tool for this purpose.

Thank you,

Ravi

snps VCF • 1.3k views
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Hi Ravi,

I have the same problem as you.

I know that the R package hierfstat should do this calculation, but I haven't tested it yet.

What kind of data have you ? Have you found a solution?

Thanks,

Guillaume

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