Question: Any tool to calculate Fst on haploid data?
1
gravatar for rkdonthu
2.2 years ago by
rkdonthu10
rkdonthu10 wrote:

Hello,

I could not find any tool/script that calculates FST on haploid data. All the tools that I know of calculate FST on diploid data only. I really appreciate anyone's help in finding a tool for this purpose.

Thank you,

Ravi

vcf snps • 909 views
ADD COMMENTlink modified 2.2 years ago • written 2.2 years ago by rkdonthu10

Hi Ravi,

I have the same problem as you.

I know that the R package hierfstat should do this calculation, but I haven't tested it yet.

What kind of data have you ? Have you found a solution?

Thanks,

Guillaume

ADD REPLYlink written 2.0 years ago by guillaume.rbt0
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