warning message with BSseq function
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@marietrijau-12457
Last seen 4.6 years ago

When I use BSseq function for BSseq objects, I get the warning message:

"In BSseq(chr = chr, pos = pos, M = M, Cov = Cov, sampleNames = c("Ctr_1", : multiple positions, collapsing BSseq object 

What does this warning mean? 

 

bsseq • 666 views
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@kasper-daniel-hansen-2979
Last seen 10 weeks ago
United States
You give it vectors of (chr, pos). These have duplicates. Say for example chr1, 888 appears twice. Then we sum up the Cov and M matrices over those two entries. Best, Kasper On Mon, Feb 27, 2017 at 8:46 AM, marie.trijau [bioc] < noreply@bioconductor.org> wrote: > Activity on a post you are following on support.bioconductor.org > > User marie.trijau <https: support.bioconductor.org="" u="" 12457=""/> wrote Question: > warning message with BSseq function > <https: support.bioconductor.org="" p="" 93113=""/>: > > When I use BSseq function for BSseq objects, I get the warning message: > > "In BSseq(chr = chr, pos = pos, M = M, Cov = Cov, sampleNames = c("Ctr_1", > : multiple postions, collapsing object > > What does this warning mean? > > > > ------------------------------ > > Post tags: bsseq > > You may reply via email or visit warning message with BSseq function >
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