I am installing Sleuth package in Opensuse. in the process of that after running biocLite("devtools") i am geting following warning messages and unable to install slueth package. Please help me on this issue
1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘curl’ had non-zero exit status
2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘openssl’ had non-zero exit status
3: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘git2r’ had non-zero exit status
4: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘httr’ had non-zero exit status
5: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘devtools’ had non-zero exit status
6: installed directory not writable, cannot update packages 'mgcv', 'survival'
There are probably other errors that you aren't showing. If you can't install the curl package, it's probably because you are missing the curl library files. If you are not sysadmin, you will need to ask the sysadmin to install the curl headers.
The same thing MAY be true for openssl. The error may be due to missing openssl headers, or it may be due to the openssl package needing curl to be installed first. The remaining errors (git2r, httr, devtools) are probably because you can't install curl.
Anyway, that is just a supposition on my part. You are just showing us the very last bit of output from the attempted installation. There was much more output, for each package, and in the output for curl it probably says something like "Can't find curl-config" or "Can't find libcurl.so" or similar, which indicates you need the lib64curl-devel rpm (this is an OpenSuse linux package, not R package) to be installed.
