convert genomic data into VCF (Variant Call Format Specification)
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jtfink • 0
@jtfink-12475
Last seen 7.1 years ago

Hello.

Do anyone has experience on converting the genotyping report into the VCF format?   I have no idea what format it will arrive but most likely it will be in a text format with millions of records.   It contains the SNP information. I would like to know if R-Bioconductor has the capability of reading million of genomic records and convert them into VCF.   There are quite a few of article mentioned about reading VCF using Bioconductor but I haven't come across any about writing(output) into VCF.

Any suggestion?

Thanks

Jenny

bioconductor • 746 views
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