mzR failure installation
1
0
Entering edit mode
@microalgues-12560
Last seen 4.5 years ago

Dear all,

I am having problems to install mzR package in R under my Ubuntu 16.04LTS distribution.

source("https://bioconductor.org/biocLite.R")
bioClite("mzR")

As you can see below I get several similar errors. I checked the software version of:

GNU Make 4.1
gcc (Ubuntu 5.4.0-6ubuntu1~16.04.4) 5.4.0 20160609
netCDF 4.4.0

And I also tried to install from git-hub

install.packages("devtools")
library(devtools)
install_github("sneumann/mzR")

but it didn't work. Could someone help me?

With thanks,

Xavier

#./boost/utility/base_from_member.hpp:xxx:xx: warning: variadic templates only available with -std=c++11 or -std=gnu++11
 template<typename ...T>

#./boost/thread/detail/invoke.hpp:xxx:xx: warning: variadic templates only available with -std=c++11 or -std=gnu++11
     invoke(Ret(*f)(Args... ), BOOST_THREAD_RV_REF(Args) ...args)

#./boost/thread/once.hpp:35:13: note:   template argument deduction/substitution failed:
boost/thread/src/pthread/thread.cpp:140:88: note:   cannot convert ‘boost::detail::{anonymous}::create_current_thread_tls_key’ (type ‘void()’) to type ‘boost::once_flag&’
             boost::call_once(current_thread_tls_init_flag,create_current_thread_tls_key);

#boost/thread/src/pthread/thread.cpp: In function ‘void boost::detail::set_current_thread_data(boost::detail::thread_data_base*)’:
boost/thread/src/pthread/thread.cpp:146:88: error: no matching function for call to ‘call_once(boost::once_flag&, void (&)())’
             boost::call_once(current_thread_tls_init_flag,create_current_thread_tls_key);

 

 

 

 

mzr r installation • 1.2k views
ADD COMMENT
0
Entering edit mode

What's the output of sessionInfo()?

ADD REPLY
0
Entering edit mode

As follow:

> sessionInfo()
R version 3.3.3 (2017-03-06)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.2 LTS

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=de_BE.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=de_BE.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=de_BE.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=de_BE.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

 

ADD REPLY
0
Entering edit mode
@laurent-gatto-5645
Last seen 9 hours ago
Belgium

I am following up about this issue which has been resolved. Details available here.

 

ADD COMMENT

Login before adding your answer.

Traffic: 393 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6