Question: Problem installing tximportData
gravatar for elg
21 months ago by
elg0 wrote:


I do not know why I can't install tximportData. I managed to install tximport package tough.

Bioconductor version 3.4 (BiocInstaller 1.24.0), ?biocLite for help
> biocLite("tximportData")
Using Bioconductor 3.4 (BiocInstaller 1.24.0), R 3.3.3 (2017-03-06).
Installing package(s) ‘tximportData’
installing the source package ‘tximportData’

trying URL ''
Content type 'application/x-gzip' length 19229186 bytes (18.3 MB)
downloaded 18.3 MB

* installing *source* package 'tximportData' ...
** inst
** help
No man pages found in package  'tximportData'
*** installing help indices
** building package indices
** installing vignettes
Warning in file(con, "w") :
  cannot open file '\\Dca/el42208$/R/win-library/3.3/tximportData/doc/index.html': No such file or directory
Error in file(con, "w") : cannot open the connection
ERROR: installing vignettes failed
* removing '\\Dca/el42208$/R/win-library/3.3/tximportData'

The downloaded source packages are in
Warning messages:
1: running command '"C:/PROGRA~1/R/R-33~1.3/bin/x64/R" CMD INSTALL -l "\\Dca\el42208$\R\win-library\3.3" C:\Users\el42208\AppData\Local\Temp\RtmpkDm5En/downloaded_packages/tximportData_1.2.0.tar.gz' had status 1
2: In install.packages(pkgs = doing, lib = lib, ...) :
  installation of package ‘tximportData’ had non-zero exit status




ADD COMMENTlink modified 21 months ago • written 21 months ago by elg0

Hi Mike,

Thank you for your reply. It seems that folder is where tximportData html tximportData.R and tximportData.Rmd are going. But I do not know why is not founding it

> sessionInfo()
R version 3.3.3 (2017-03-06)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1

[1] LC_COLLATE=English_United Kingdom.1252  LC_CTYPE=English_United Kingdom.1252    LC_MONETARY=English_United Kingdom.1252 LC_NUMERIC=C                           
[5] LC_TIME=English_United Kingdom.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] knitr_1.15.1         rvcheck_0.0.8        BiocInstaller_1.24.0

loaded via a namespace (and not attached):
[1] tools_3.3.3



ADD REPLYlink written 21 months ago by elg0

I'm not sure what is the problem, but you can try installing to a different location using the lib.loc argument, see 

ADD REPLYlink written 21 months ago by Michael Love20k
gravatar for Michael Love
21 months ago by
Michael Love20k
United States
Michael Love20k wrote:

hi Elena,

the problem may have to do with this location:


which is not found upon installation. Is this a typical location for you machine? Can you include your sessionInfo()?

ADD COMMENTlink written 21 months ago by Michael Love20k
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