Question: list fo genes by cnv
gravatar for julrodr80
2.7 years ago by
julrodr8030 wrote:

I need to obtain the list of genes that overlap with a list of cnvs.

The result that I would like to obtain is similar to wich you can obtain using "splitByOverlap", but in my version of R this function is not found. I this example (A: Mapping genome regions to gene symbols) works fine, but not for me (I don't know why)

Is there another way to do the same??

thank you very much in advance

Best regards

ADD COMMENTlink modified 2.7 years ago by Martin Morgan ♦♦ 24k • written 2.7 years ago by julrodr8030

What version of R/Bioconductor are you using? Start R, load GenomicRanges and then do


and copy/paste the output.

ADD REPLYlink written 2.7 years ago by James W. MacDonald52k

thank you very much for your answer. The solution was this

solved!! thanks!!

ADD REPLYlink written 2.7 years ago by julrodr8030
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