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Question: TF ANALYSIS USING JASPAR
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gravatar for nia
7 months ago by
nia0
nia0 wrote:

Dear fellows,
 

firstly i identified degs using LIMMA dataset provide 1065 probeids with relevant info. from which i select 260 genes (no specific reasons ) 105 was up-reg and 155 was down-reg then i do func. enrichment using genecodis3  where i submit 260 genes and i got around 90 GO molecular func id and 11 kegg pathways.  then i do mi RNA analysis , 4 miRNA was predicted.

Now i want to do tf analysis from JASPAR db i searched a lot of tutorial on that but i didn’t get the point what i have to enter as input my 260 gene list information or the data which i retrieved from mirna analysis, kindly tell me the procedure of using jaspar or send a link of of jaspar tutorial which have all the solve queries step by step OR recommend any other tool which do tf analysis

 

ADD COMMENTlink modified 7 months ago by James W. MacDonald45k • written 7 months ago by nia0
0
gravatar for James W. MacDonald
7 months ago by
United States
James W. MacDonald45k wrote:

Jaspar isn't a Bioconductor package, so this is not the correct place to ask for help. It seems there is documentation on their website - have you read that?

ADD COMMENTlink written 7 months ago by James W. MacDonald45k
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