gravatar for nia
20 months ago by
nia10 wrote:

Dear fellows,

firstly i identified degs using LIMMA dataset provide 1065 probeids with relevant info. from which i select 260 genes (no specific reasons ) 105 was up-reg and 155 was down-reg then i do func. enrichment using genecodis3  where i submit 260 genes and i got around 90 GO molecular func id and 11 kegg pathways.  then i do mi RNA analysis , 4 miRNA was predicted.

Now i want to do tf analysis from JASPAR db i searched a lot of tutorial on that but i didn’t get the point what i have to enter as input my 260 gene list information or the data which i retrieved from mirna analysis, kindly tell me the procedure of using jaspar or send a link of of jaspar tutorial which have all the solve queries step by step OR recommend any other tool which do tf analysis


ADD COMMENTlink modified 20 months ago by James W. MacDonald48k • written 20 months ago by nia10
gravatar for James W. MacDonald
20 months ago by
United States
James W. MacDonald48k wrote:

Jaspar isn't a Bioconductor package, so this is not the correct place to ask for help. It seems there is documentation on their website - have you read that?

ADD COMMENTlink written 20 months ago by James W. MacDonald48k
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