Question

RNAseq read coverage plot: What tool?

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alakatos ▴ 130

@alakatos-6983

Last seen 4.6 years ago

United States

Hello All,

I would like to generate a similar RNAseq read coverage plot (attached) of a gene for multiple samples (12).

Would you please recommend a tool in Bioconductor?

Thanks a lot,

Anita

rnaseq visualization plotcoveragehist • 2.2k views

ADD COMMENT • link updated 7.0 years ago by Ou, Jianhong ★ 1.3k • written 7.0 years ago by alakatos ▴ 130

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Thank you all for your help.

Anita

ADD REPLY • link 7.0 years ago alakatos ▴ 130

score 0 · Answer 1 · 2017-04-24

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James W. MacDonald 65k

@james-w-macdonald-5106

Last seen 9 hours ago

United States

Gviz or ggbio

ADD COMMENT • link 7.0 years ago James W. MacDonald 65k

score 0 · Answer 2 · 2017-04-24

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Ou, Jianhong ★ 1.3k

@ou-jianhong-4539

Last seen 6 days ago

United States

Givz or trackViewer?

ADD COMMENT • link 7.0 years ago Ou, Jianhong ★ 1.3k