I tried to use BioSeqClass function predictPFAM()
# Protein Pfam domain prediction
predictPFAM(seq, hmmpfam.path, pfam.path, Evalue=10^-5)
I downloaded hmmer and Pfam-A.hmm and included their paths in function. But every time i try to use protein sequence in any format I get
" 'x' must be an XStringSet object " error.
I use my sequence in AAStringset clas which is regular class under XStringSet family.
Thanks very much!