Question: Scater: mito.drop on an absolute value ?
gravatar for maria.vladoiu
8 months ago by
maria.vladoiu0 wrote:

Hello, I am using scater for analyzing single cell RNAsequ data from one of my samples that contained healthy cells and dying cells. My mitochondrial gene distribution is composed of cells that have really low mitochondrial content and really high mitochondrial content. I was wondering if it was possible to do the mito.drop based on an absolute value such a threshold percentage rather than median (nmads). Thank you, Maria



ADD COMMENTlink modified 8 months ago • written 8 months ago by maria.vladoiu0
  1. Put scater as a tag, otherwise the maintainers don't get notified.
  2. Give a more specific reason why you think that nmads isn't suitable.
ADD REPLYlink written 8 months ago by Aaron Lun18k
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