Question: DESeq2 function in interpreting the differential expression results in terms of higher order biological processes or molecular pathways
0
gravatar for tarun2
2.6 years ago by
tarun20
tarun20 wrote:

Hi,

 

Does DESeq2 have a build in function for pathway analysis like Gene Ontology (GO) and KEGG or any pathway?

 

Thanks and best regards.

 

Sincerely,

Asher

deseq2 pathway analysis • 579 views
ADD COMMENTlink modified 2.6 years ago by Michael Love26k • written 2.6 years ago by tarun20
Answer: DESeq2 function in interpreting the differential expression results in terms of
1
gravatar for Michael Love
2.6 years ago by
Michael Love26k
United States
Michael Love26k wrote:

There are some support posts about using goseq afterwards with DESeq2 results.

Outside of DESeq2 I like ROAST and Camera from limma as gene set methods.

ADD COMMENTlink written 2.6 years ago by Michael Love26k
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