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Question: DESeq2 function in interpreting the differential expression results in terms of higher order biological processes or molecular pathways
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gravatar for tarun2
6 months ago by
tarun20
tarun20 wrote:

Hi,

 

Does DESeq2 have a build in function for pathway analysis like Gene Ontology (GO) and KEGG or any pathway?

 

Thanks and best regards.

 

Sincerely,

Asher

ADD COMMENTlink modified 6 months ago by Michael Love15k • written 6 months ago by tarun20
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gravatar for Michael Love
6 months ago by
Michael Love15k
United States
Michael Love15k wrote:

There are some support posts about using goseq afterwards with DESeq2 results.

Outside of DESeq2 I like ROAST and Camera from limma as gene set methods.

ADD COMMENTlink written 6 months ago by Michael Love15k
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