Hi, I'm new at R/Bioconductor.
I need a data structure that represent the dataset that i'm working with.
My dataset is a set of samples: each sample is made up of two file (.gdm or .gtf)
1) set of region:
chr left right strand name score signal pvalue qvalue peak
chr1 237680 237830 * . 0 17.1875 15.9472 -1 -1
chr1 521500 521650 * . 0 15.5625 18.0962 -1 -1
chr1 714060 714210 * . 0 139.40625 316.755 -1 -1
audit_internal_action experiment not submitted to GEO, out of date analysis
biosample_organism Homo sapiens
(these example are taken from my files)
I know Granges and GrangesList are useful for representing a regions or list of regions respectively, but i don't know how to represent and bind my metadata to my regions.
is there any other package/class that could help me or I need to create one "ad hoc"?