I'm using DiffBind for many of my ChIPseq analyses and recently asked myself, if the "concentration" that is given as output of dba.report() is normalized or not. In the reference manual it is written that this number is the mean (log) reads across all samples of the specific group.
1) Are you referring to log2 or log10?
2) Were these values generated using the normalization method specified in dba.count()? (I'm using DBA_SCORE_TMM_READS_FULL because we have no input available)
Would be great if somebody could give me a feedback. Thanks!