Sharing SC3_interactive results
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cfustero ▴ 20
@cfustero-13016
Last seen 4.3 years ago
Madrid (Spain)

Hi,

I have been testing the SC3 package with some single cell data and I was wondering if there is an easy way to share the interactive results.
I read there was an option in an old version of the package to save the results as .rds sc3(interactivity = FALSE) but it's no longer available.

Any help would be appreciated!

Coral

 

SC3 single-cell shiny • 707 views
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@vladimir-kiselev-9342
Last seen 2.5 years ago
Sanger Institute, Cambridge, UK

Hi Coral,

In the newest version of SC3, if you share (for example save it in an ".rds" file) a scater object that you used to run the SC3 analysis on, it will contain all the data required for sc3_interactive(). So the person that you share it will only need to run sc3_interactive(YOUR_SCATER_OBJECT) and will see all the results you have produced.

Hope this helps,

Cheers,

Vlad

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So if I want to share the results with somebody, she/he will have to install sc3, read the .rds file and run sc3_interactive, right? Is there any way I can just share them as a link?

Thanks again!

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Yes, it is right. And no, you can't share the results via a link, your collaborator needs to have R and SC3 installed to be able to run sc3_interactive().

Cheers,

Vlad

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