fRMA normalization for Mouse Gene 2.1 ST Array
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@arisarkar88-11464
Last seen 6 months ago
Los Angeles

Hello,

          Can anyone help me with fRMA? I need to execute fRMA for "Affymetrix Mouse Gene 2.1 ST Array [transcript (gene) version]?

frma affymetrix mouse gene arrays • 673 views
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@matthew-mccall-4459
Last seen 2.4 years ago
United States
Unfortunately, there are not frma vectors made for this platform. You could make your own frma vectors or use a related preprocessing algorithm (e.g. rma).
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Thank you..but I am a novice in R. Can you please help me regarding how to create frma vector for this case? 

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As an R novice, I would not recommend undertaking the creation of your own frma vectors. It can be a fairly involved process, especially when you're dealing with a new platform. However, if you decide to proceed, I would start with this paper:

http://www.biomedcentral.com/1471-2105/12/369

And then look at the frmaTools package for some functions that will be useful when creating the frma vectors. 

 

 

 

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