Hello,
I am just getting started with processing mRNA data. I would like to use Bioconductor and R to analyse 12 different RNAseq datasets to look at differential gene expression (all analysed on Illumina HiSeq 2500).
I am stuck on the first step - which data files to download! This is the study I am interested in. Can anyone post some screenshots on exactly what links I need to click? Thanks for your help.
Amy.
You might also try recount:
https://jhubiostatistics.shinyapps.io/recount/
If your data sets are in there you can get them easily (already processed and easy to merge) using recount:
https://jhubiostatistics.shinyapps.io/recount/