gene expression data analysis and batch effect methods
1
0
Entering edit mode
tati6406 • 0
@tati6406-10823
Last seen 6.2 years ago

I have a gene expression data including intrinsic subtypes of breast cancer, but it does not have paired normal samples, Is it possible to use normal samples from different batch if I use batch effect removal methods eg COMBAT or DWD?

batch effect gene expression • 998 views
ADD COMMENT
2
Entering edit mode
chris86 ▴ 420
@chris86-8408
Last seen 4.4 years ago
UCL, United Kingdom

You cant remove batch effects if the data is 100% confounded.

Better just to ignore the normals.

ADD COMMENT

Login before adding your answer.

Traffic: 732 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6