Question

Database for CNV Annotation

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Haiying.Kong ▴ 110

@haiyingkong-9254

Last seen 5.0 years ago

Germany

I would like to annotate a list of CNVs that I identified. The list has chromosome, start and end positions.

I would like to get gene name, intron or exon, 5'UTR, 3'UTR, Intergenec region, 5'Flank, if including splice site, lincRNAs, ....all these information for the CNVs in the list.

Which database can I use for this purpose?

cnv annotation • 1.2k views

ADD COMMENT • link updated 6.9 years ago by James W. MacDonald 65k • written 6.9 years ago by Haiying.Kong ▴ 110

score 3 · Answer 1 · 2017-05-30

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James W. MacDonald 65k

@james-w-macdonald-5106

Last seen 5 minutes ago

United States

The ChipPeakAnno package would be useful.

ADD COMMENT • link 6.9 years ago James W. MacDonald 65k

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Thanks a lot. :)

ADD REPLY • link 6.9 years ago Haiying.Kong ▴ 110

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hi，you know how to do this now？

ADD REPLY • link 6.8 years ago fjpt.com • 0