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Question: Database for CNV Annotation
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gravatar for Haiying.Kong
5 months ago by
Haiying.Kong90
Germany
Haiying.Kong90 wrote:

I would like to annotate a list of CNVs that I identified. The list has chromosome, start and end positions.

I would like to get gene name, intron or exon, 5'UTR, 3'UTR, Intergenec region, 5'Flank, if including splice site, lincRNAs, ....all these information for the CNVs in the list.

Which database can I use for this purpose?

ADD COMMENTlink modified 5 months ago by James W. MacDonald45k • written 5 months ago by Haiying.Kong90
3
gravatar for James W. MacDonald
5 months ago by
United States
James W. MacDonald45k wrote:

The ChipPeakAnno package would be useful.

ADD COMMENTlink written 5 months ago by James W. MacDonald45k

Thanks a lot.  :)

ADD REPLYlink written 5 months ago by Haiying.Kong90

hi,you know how to do this now?
 

ADD REPLYlink written 4 months ago by fjpt.com0
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