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News: Ensembl 89 has been released
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gravatar for Thomas Maurel
16 months ago by
Thomas Maurel740
United Kingdom
Thomas Maurel740 wrote:

Dear all

The new Ensembl marts for release 89 are now live on www.ensembl.org.

If you are using biomaRt, you can change your host to access our most recent data:

ensembl_mart_89 <- useEnsembl(biomart=“ensembl")

 

Ensembl Genes 89
   Updated Microarray probes/probesets for all the species
   Dataset "meugenii_gene_ensembl" was renamed to "neugenii_gene_ensembl"
   Dataset "tsyrichta_gene_ensembl" was renamed to "csyrichta_gene_ensembl"
   GO and GOSlim terms were moved from Translation to Transcript

Mouse Genes 89
   Microarray probes/probesets added for all the mouse strains
   GO and GOSlim terms were moved from Translation to Transcript

Ensembl Variation 89
   New filters for regulatory and motif consequence types

Ensembl Regulation 89
   Updated VISTA Enhancers for human and mouse

Please note that the vega mart has been retired.

You can find the complete list of the changes at http://www.ensembl.org/info/website/news.html

ADD COMMENTlink written 16 months ago by Thomas Maurel740
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