problem in installing flowclust
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shadhiksk • 0
@shadhiksk-13179
Last seen 3.9 years ago

I'm facing problem in installing flowClust package which is hampering the loading of openCyto.

It is showing the error as 

Installing package(s) ‘flowClust’
Package which is only available in source form, and may need compilation of C/C++/Fortran:
  ‘flowClust’
  These will not be installed
installation path not writeable, unable to update packages: foreign, Matrix.

Can u please help me in rectifying this and install flowClust!

rstudio flowclust • 726 views
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Do you have system admin rights on the computer you are trying to use?   Please also include the command you used to try to install, the output, and the results of running `sessionInfo()` .  

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shadhiksk • 0
@shadhiksk-13179
Last seen 3.9 years ago

> source("https://bioconductor.org/biocLite.R")
Bioconductor version 3.5 (BiocInstaller 1.26.0), ?biocLite for help
> biocLite("flowClust")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.5 (BiocInstaller 1.26.0), R 3.4.0 (2017-04-21).
Installing package(s) ‘flowClust’
Package which is only available in source form, and may need compilation of
  C/C++/Fortran: ‘flowClust’
  These will not be installed

> sessionInfo()
R version 3.4.0 (2017-04-21)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows >= 8 x64 (build 9200)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252   
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C                          
[5] LC_TIME=English_United States.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.26.0 Rcpp_0.12.11        

loaded via a namespace (and not attached):
[1] compiler_3.4.0 tools_3.4.0 

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shepherl 2.7k
@lshep
Last seen 30 minutes ago
United States

This sounds similar to this support site question: Installation of samr package on R v3.4 mac OS Sierra  .  It might be that you are missing some system dependency or the fortran or C compilers in order to install the package correctly.

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shepherl 2.7k
@lshep
Last seen 30 minutes ago
United States

Also it appears that the `flowClust` package has not build correctly on Bioconductor 3.5 so the maintainer might have to make some changes before it will become available. 

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