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News: ensembl 89 gtfs and fasta twobits have been added to AnnotationHub
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gravatar for shepherl
3 months ago by
shepherl ♦♦ 380
shepherl ♦♦ 380 wrote:

Hello all, 

The ensembl 89 gtf (converted to GRanges on the fly) and fasta (twobit files) been added to AnnotationHub and are currently available in Bioc3.6 (development) with AnnotationHub (<= 2.9.0):

 

``` 

> library(AnnotationHub)
> hub = AnnotationHub()
updating metadata: retrieving 1 resource
  |======================================================================| 100%
snapshotDate(): 2017-06-07
> length(query(hub, c("ensembl", "gtf", "release-89")))     
[1] 215

> length(query(hub, c("fasta", "release-89", "twobit")))    
[1] 353

```

Thank you

ADD COMMENTlink written 3 months ago by shepherl ♦♦ 380
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