ChIPQC with GRCh38/hg38 requires manual loading of hg38 annotation
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Coby Viner ▴ 50
@coby-viner-10939
Last seen 5 months ago
University of Toronto, Canada

While ChIPQC can ChIPQC GRCh38 usage yields "Unsupported annotation:hg38" on GRCh38/hg38, via annotation="hg38", it requires manual loading of TxDb.Hsapiens.UCSC.hg38.knownGene. This package should be loaded as a dependency, as with other annotations.

chipqc • 765 views
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@thomas-carroll-7019
Last seen 16 months ago
United States/New York/The Rockefeller …

hi Coby,

 

Thank you for the report. This should work now with new ChIPQC version 1.12.1

 

best,

 

tom

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