Search
Question: how to use q value to select differentially expressed genes
0
gravatar for ahmadvandra
11 days ago by
ahmadvandra0 wrote:

I have cuffdiff files including control and treated FPKMs, log2 fold change, p-value, q-value, test stat. and significance values . To select differentially expressed genes (up/down regulated genes) respect to fold change, I would like to know whether I should only select those genes with q- values<0.05 ( q-value cutoff )?

Thank you in advance

 

ADD COMMENTlink modified 9 days ago by Lluís R240 • written 11 days ago by ahmadvandra0
0
gravatar for Lluís R
9 days ago by
Lluís R240
European Union
Lluís R240 wrote:

The threshold for considering a fold change significant is arbitrary (but usually the q-value below 0.05 is used)

ADD COMMENTlink written 9 days ago by Lluís R240
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 168 users visited in the last hour