I am new to multifactor analysis with edgeR, I have the following 12 samples (4 conditions and 3 replictaes)
I would like to find genes with these properties:
- genes differentially modulated between wt-no_diet group (sample1-3) and ko-no_diet group (sample4-6)
- genes that are affected by the diet treatment only in ko group
- genes whose expression in the ko-yes_diet group (sample10-12) tends to get similar to the expression in the wt-no_diet group (sample1-3).
Any suggestion will be greatly appreciated,