Question: How to combine CNVDetectionResult objects in cn.mops package
0
gravatar for Haiying.Kong
23 months ago by
Haiying.Kong110
Germany
Haiying.Kong110 wrote:

I ran cn.mops on WES data that are from different protocols. I got one CNVDetectionResult object for each protocol. Now, I would like to combine them into one large CNVDetectionResult object.

Is there any method to do this?

If I have to do manually, it is not that straightforward. The slot "cnvs" would be fine, but the slot "cnvr" has combined overlapping genomic regions from different samples.

cn.mops • 474 views
ADD COMMENTlink modified 23 months ago by Günter Klambauer540 • written 23 months ago by Haiying.Kong110
Answer: How to combine CNVDetectionResult objects in cn.mops package
2
gravatar for Günter Klambauer
23 months ago by
Austria
Günter Klambauer540 wrote:

Unfortunately I did not include a functionality like that. For the slot "cnvs" and "segmentation", I think, you just have to concatenate the results. For the "cnvr" slot, a union of the regions in the "cnvs" slot would be necessary!

Regards,

günter

ADD COMMENTlink written 23 months ago by Günter Klambauer540
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