How to combine CNVDetectionResult objects in cn.mops package
1
0
Entering edit mode
Haiying.Kong ▴ 110
@haiyingkong-9254
Last seen 2.4 years ago
Germany

I ran cn.mops on WES data that are from different protocols. I got one CNVDetectionResult object for each protocol. Now, I would like to combine them into one large CNVDetectionResult object.

Is there any method to do this?

If I have to do manually, it is not that straightforward. The slot "cnvs" would be fine, but the slot "cnvr" has combined overlapping genomic regions from different samples.

cn.mops • 633 views
ADD COMMENT
2
Entering edit mode
@gunter-klambauer-5426
Last seen 8 months ago
Austria

Unfortunately I did not include a functionality like that. For the slot "cnvs" and "segmentation", I think, you just have to concatenate the results. For the "cnvr" slot, a union of the regions in the "cnvs" slot would be necessary!

Regards,

günter

ADD COMMENT

Login before adding your answer.

Traffic: 200 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6