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Question: Cannot find dotneato-config in RgraphViz
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gravatar for Jeff Gentry
13.3 years ago by
Jeff Gentry3.9k
Jeff Gentry3.9k wrote:
> configure: error: please specify a valid path to 'dotneato-config' version > >= 1.12 using --with-graphviz=DIR > ERROR: configuration failed for package 'Rgraphviz' > However, my /usr/bin doesn't have such a file. > Is there a version resriction to install Rgraphviz? > or I have done something wrong (which is more likely). My suspicion is that you have something installed improperly. It sounds like you might have already, but make sure that you install Rgraphviz with the '--with-graphviz=/usr/' parameter: R CMD INSTALL --configure-args="--with-graphviz=/usr" Rgraphviz If you've tried that and still no-go, I believe that you don't have graphviz installed properly. -J
ADD COMMENTlink modified 13.3 years ago by jihoon@cs.wisc.edu40 • written 13.3 years ago by Jeff Gentry3.9k
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gravatar for Seth Falcon
13.3 years ago by
Seth Falcon7.4k
Seth Falcon7.4k wrote:
On 25 Jul 2005, jgentry at jimmy.harvard.edu wrote: >> configure: error: please specify a valid path to 'dotneato-config' >> version >>> = 1.12 using --with-graphviz=DIR >> ERROR: configuration failed for package 'Rgraphviz' > >> However, my /usr/bin doesn't have such a file. >> Is there a version resriction to install Rgraphviz? >> or I have done something wrong (which is more likely). Can you tell us the version of graphviz you have installed? I think the graphviz project changed their build/install setup in the latest release and that could be what we are seeing here. + seth
ADD COMMENTlink written 13.3 years ago by Seth Falcon7.4k
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gravatar for jihoon@cs.wisc.edu
13.3 years ago by
jihoon@cs.wisc.edu40 wrote:
For me, I think it is graphviz version problem. I've consulted graphviz installation problem with original developers and I got following answer: "The dotneato-config mechanism is gone in graphviz-2.4 in favor of a pkgconfig mechanism." What is your version of graphviz? I want to use that worked version instead. Thank you. Jihoon Kim >> configure: error: please specify a valid path to 'dotneato-config' >> version >> >= 1.12 using --with-graphviz=DIR >> ERROR: configuration failed for package 'Rgraphviz' > >> However, my /usr/bin doesn't have such a file. >> Is there a version resriction to install Rgraphviz? >> or I have done something wrong (which is more likely). > > My suspicion is that you have something installed improperly. It sounds > like you might have already, but make sure that you install Rgraphviz with > the '--with-graphviz=/usr/' parameter: > R CMD INSTALL --configure-args="--with-graphviz=/usr" Rgraphviz > > If you've tried that and still no-go, I believe that you don't have > graphviz installed properly. > > -J > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor >
ADD COMMENTlink written 13.3 years ago by jihoon@cs.wisc.edu40
On Mon, 25 Jul 2005 jihoon at cs.wisc.edu wrote: > What is your version of graphviz? Version 2.2 of Graphviz will work. Yesterday evening Michael Lawrence emailed me some patches to get Rgraphviz to work for 2.4, although there appears to be some problems w/ the new layout mechanisms and certain graphs, so I will not check in the 2.4 compatability updates until that's resolved. -J
ADD REPLYlink written 13.2 years ago by Jeff Gentry3.9k
0
gravatar for Jeff Gentry
13.3 years ago by
Jeff Gentry3.9k
Jeff Gentry3.9k wrote:
On Mon, 25 Jul 2005 jihoon at cs.wisc.edu wrote: > I've consulted graphviz installation problem with original developers > and I got following answer: > "The dotneato-config mechanism is gone in graphviz-2.4 in favor of a > pkgconfig mechanism." Ouch. I already have been intending to fix a bug I found in Rgraphviz, now apparently the configure needs to be fixed as well. That should be checked in over the next day or so, I'm still recovering from a crashed hard drive so slowly getting back to things. If you use any version pre 2.4, it should work based on that email (try 2.2 in particular).
ADD COMMENTlink written 13.3 years ago by Jeff Gentry3.9k
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