Extracting subclusters from original data
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Mina • 0
@mina-13589
Last seen 4.2 years ago

I am analyzing a nontargeted metabolomic data set using ComplexHeatmap. After I made a heatmap of all identified metabolites, I decided to continue the analyses only of compounds that are in one cluster. How do I extract the data from e.g. Cluster1 and make a new dataframe out of it?

complexheatmap metabolomics • 1.1k views
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sina.nassiri ▴ 110
@sinanassiri-10062
Last seen 9 weeks ago
Switzerland/Lausanne

I'm not familiar with ComplexHeatmap, but if it produces a tree (as resulting from hclust e.g.) you can directly pass it to cutree().

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Thank you Sina.  That did help.

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