Question: Extracting subclusters from original data
0
gravatar for Mina
2.3 years ago by
Mina0
Mina0 wrote:

I am analyzing a nontargeted metabolomic data set using ComplexHeatmap. After I made a heatmap of all identified metabolites, I decided to continue the analyses only of compounds that are in one cluster. How do I extract the data from e.g. Cluster1 and make a new dataframe out of it?

ADD COMMENTlink modified 2.3 years ago by sina.nassiri90 • written 2.3 years ago by Mina0
Answer: Extracting subclusters from original data
0
gravatar for sina.nassiri
2.3 years ago by
sina.nassiri90
Switzerland/Lausanne
sina.nassiri90 wrote:

I'm not familiar with ComplexHeatmap, but if it produces a tree (as resulting from hclust e.g.) you can directly pass it to cutree().

ADD COMMENTlink written 2.3 years ago by sina.nassiri90

Thank you Sina.  That did help.

ADD REPLYlink written 2.3 years ago by Mina0
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