Question: IGV like plots with GViz
14 months ago by
Deepak Tanwar • 10
McGill University, Canada
Deepak Tanwar • 10 wrote:
I would like to create coverage plots like
IGV (like we obtain after
How I am trying to do?
- Read the bam files with
- Normalized the read counts.
- code to make data track:
track <- DataTrack(range = data, genome = gen, type = "histogram", name = "normalized track", window = -1, chromosome = chr, color = col, fill=col, col.histogram=col, background.title = rcol, trackType = "DataTrack")
Plots I a getting are not same as they are displayed on IGV
How can I improve my coverage plot?
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