I'd like to use the GOsummaries package in a workflow that I'm building. But I do not understand the rationale behind how the
genes2 vectors were constructed in the package vignette (page 2): https://bioconductor.org/packages/release/bioc/vignettes/GOsummaries/inst/doc/GOsummaries-basics.pdf. I have a gene list like
mygenes = c("some_gene1", "some_gene2", ... "some_geneN") that I'd like to use the GOsummaries package with. Do I need to assign my gene list to one object (e.g.,
genes1) and then assign the entire genome gene list to another object (e.g.,
genes2) and then do
gl = list(List = list(genes1, genes2)) or is there some other way?