I am trying to install DESeq but the package GenomeInfoDb will not load:
Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
Error: package or namespace load failed for �GenomeInfoDb� in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
there is no package called �GenomeInfoDbData�
Error: package ‘GenomeInfoDb’ could not be loaded
Even when trying to load the package seperately:
Bioconductor version 3.5 (BiocInstaller 1.26.0), ?biocLite for help
Using Bioconductor 3.5 (BiocInstaller 1.26.0), R 3.4.1 (2017-06-30).
Installing package(s) �GenomeInfoDb�
also installing the dependency �GenomeInfoDbData�
cannot open URL 'https://bioconductor.org/packages/3.5/data/annotation/bin/windows/contrib/3.4/PACKAGES.rds': HTTP status was '404 Not Found'cannot open URL 'https://bioconductor.org/packages/3.5/data/experiment/bin/windows/contrib/3.4/PACKAGES.rds': HTTP status was '404 Not Found'trying URL 'https://bioconductor.org/packages/3.5/bioc/bin/windows/contrib/3.4/GenomeInfoDb_1.12.2.zip'
Content type 'application/zip' length 7073643 bytes (6.7 MB)
downloaded 6.7 MB
package ‘GenomeInfoDb’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
installing the source package �GenomeInfoDbData�
Content type 'application/x-gzip' length 16238792 bytes (15.5 MB)
downloaded 15.5 MB
CMD.EXE was started with the above path as the current directory.
UNC paths are not supported. Defaulting to Windows directory.
'C:\Program' is not recognized as an internal or external command,
operable program or batch file.
running command '"C:/Program Files/R/R-34~1.1/bin/x64/R" CMD INSTALL -l "\\csce.datastore.ed.ac.uk\csce\biology\users\s14747**\R\win-library\3.4" C:\Users\s14747**\AppData\Local\Temp\RtmpgFRc4Z/downloaded_packages/GenomeInfoDbData_0.99.0.tar.gz' had status 1installation of package �GenomeInfoDbData� had non-zero exit status
The downloaded source packages are in
Any help appreciated.