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Question: generating an order ranked gene list
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gravatar for bruno.saubamea
4 months ago by
bruno.saubamea0 wrote:

Dear bioconductors

Must be a very basic question but I'm unable to find how to generate an order ranked genelist to feed into gseKEGG function in ClusterProfiler.

I work on R and have a dataframe or matrix of gene names with associated FC values, pvalues, adjusted pvalues (among others).

Can someone help?

thanks in advance

bruno

ADD COMMENTlink modified 4 months ago • written 4 months ago by bruno.saubamea0
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gravatar for James W. MacDonald
4 months ago by
United States
James W. MacDonald45k wrote:

 You would have to first define what an 'order ranked genelist' might be. But I would imagine something like sort or order would be useful.

ADD COMMENTlink written 4 months ago by James W. MacDonald45k
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gravatar for bruno.saubamea
4 months ago by
bruno.saubamea0 wrote:

Yes it was that simple. Thank you

ADD COMMENTlink written 4 months ago by bruno.saubamea0
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