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Bogdan ▴ 620
@bogdan-2367
Last seen 6 weeks ago
Palo Alto, CA, USA

Dear all,

please could you let me know on the following : as the function Oncoplot() in the package "maftools" is based on the Oncoprint() function in ComplexHeatmap, does it imply that any options from Oncoprint() we can use for Oncoplot() ?

thank you,

-- bogdan

complexheatmap maftools • 1.0k views
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anand_mt ▴ 80
@anand_mt-10016
Last seen 6 months ago

Hi Bogdan,

maftools uses complexheatmaps oncoprint source code but with little modifications to automate the plotting. However you can run oncoplot function with writeMatrix = TRUE which will write the underlying matrix to an output file. This file can be directly used as an input to complexheatmaps conoprint function. See ?oncoplot for details. Hope this helps.

-Anand.

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Thank you Anand ;)

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Hi Anand, please may I ask : how shall i specify for Oncoplot a specific order of the samples to be displayed ?

thank you,

-- bogdan