Question: Common dispersion value using edgeR for DEGs analysis
0
gravatar for baus87
2.3 years ago by
baus870
baus870 wrote:

Dear all,

i'm doing a DEGs analysis on edgeR. 
Count reads are from a RNA-seq experiment based on 2 thesis and 3 bio. rep.s each. We're talking about 10k genes odd. (so the generated matrix is a 6, columns, per 10k, raws)

The common dispersion value is 0.04. Could it be considered a good value? Could anyone talk me about him/her experience about it?

Thanks in advance,

Antonio Z.

edger degs common disperion • 613 views
ADD COMMENTlink modified 2.3 years ago by Aaron Lun25k • written 2.3 years ago by baus870
Answer: Common dispersion value using edgeR for DEGs analysis
3
gravatar for Aaron Lun
2.3 years ago by
Aaron Lun25k
Cambridge, United Kingdom
Aaron Lun25k wrote:

Dispersion values of 0.01-0.05 are typical for most laboratory-controlled experiments.

ADD COMMENTlink written 2.3 years ago by Aaron Lun25k
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