Common dispersion value using edgeR for DEGs analysis
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baus87 • 0
@baus87-13757
Last seen 3.4 years ago

Dear all,

i'm doing a DEGs analysis on edgeR. 
Count reads are from a RNA-seq experiment based on 2 thesis and 3 bio. rep.s each. We're talking about 10k genes odd. (so the generated matrix is a 6, columns, per 10k, raws)

The common dispersion value is 0.04. Could it be considered a good value? Could anyone talk me about him/her experience about it?

Thanks in advance,

Antonio Z.

edgeR DEGS common disperion • 722 views
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Aaron Lun ★ 27k
@alun
Last seen 10 hours ago
The city by the bay

Dispersion values of 0.01-0.05 are typical for most laboratory-controlled experiments.

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