i'm doing a DEGs analysis on edgeR.
Count reads are from a RNA-seq experiment based on 2 thesis and 3 bio. rep.s each. We're talking about 10k genes odd. (so the generated matrix is a 6, columns, per 10k, raws)
The common dispersion value is 0.04. Could it be considered a good value? Could anyone talk me about him/her experience about it?
Thanks in advance,