I was plotting 3D PCA's from Desq2 output using simple:
> pcaplot3d(ddsMF, intgroup = "donor")
I then updated some packages:
> install.packages(c("httr", "Matrix", "plotrix", "shape", "shiny", "threejs", "tidyr"))
And now the pcaplot3D function returns this error:
Error in scatterplot3js(d[, 1:3], color = cols, renderer = "canvas", size = 1.3, :
(list) object cannot be coerced to type 'double'
I have then run the same code on the same data on my computer at home, without updating packages, and it works well again.
Stupidly I then updated the packages and the same error popped up.
system x86_64, darwin15.6.0
svn rev 72865
version.string R version 3.4.1 (2017-06-30)
nickname Single Candle